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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015791955.1_cds_XP_016509613.1_2176
CDS Infomation

[gene=LOC107827044] [db_xref=GeneID:107827044] [protein=cleavage stimulation factor subunit 77-like isoform X2] [protein_id=XP_016509613.1] [location=join(22474..22584,25440..25568,25857..25903,26420..26483,27799..27919,28027..28085,28166..28234,29866..30006,30332..30396,30740..30836,31508..31567,31957..32109,32281..32347,32431..32532,32979..33125,33945..34133,34431..34609)] [gbkey=CDS]
Sequence

ATGACCTCAGTGAGGAAAGCATACCAAAGAGCTATTGTCACCCCAACCCATCACGTGGAA
CAGCTTTGGAGGGACTATGAGAATTTTGAAAATTCAATTAGTCGAGCCTTGGCAAAAGGG
CTGGTCTCTGAATACCAACCAAAATATAACAGTGCGAGGGCTGTATACAGAGAAAGGAAG
AAGTACATTGATGAAATTGATTGGAATATGCTAGCGATTCCACCTTCCGGCTCTTCCAAG
GAGGAAATGCAATGGATGGCATGGAAAAGACTTCTAGCCTTTGAGAAAGCAAACCCCCAG
AGGATAGACAGTGCTTCTGCTAATAAAAGAATTGTGTTCACATATGAGCAGTGCCTCATG
TATTTGTATCATTATCCTGACATATGGTATGAATATGCCACATGGCATGCAAAAGCTGGT
TCAATAGACTCTGCTATCAAGGTTTTCCAGCGAGCTCTAAAAGCTCTTCCTGACTCCGAA
ATGCTCAGATATGCTTATGCTGAACTTGAGGAATCACGTGGAGCCCTTCAGGCTGCTAAA
AAAGTATACGAAAATCTTCTGGGGGATGGATCCAATGCCTCAGCACTGTCTCATATCCAG
TTTATAAGGTTTTTAAGAAGAAGTGAAGGAGTTGAAGCAGCTCGCAAATACTTTCTTGAT
GCACGGAAATCTCCAAATTGCACTTACCATGTCTATGTAGCTCACGCGATGATGGCTTTT
TGTCTTGACAAGGATGCAAAGATGGCACACAATGTTTTCGAAGCAGGGTTGAAACGCTTT
ATGCATGAGCCTGGATATATCCTTGAGTATGCAGATTTCCTTTATCGTTTGAATGACGAT
AGAAACATCAGAGCATTATTTGAACGAGCATTGAGCTCACTCCCCCCAGAGGAATCTGTT
GAGGTTTGGAAAAAATTCACTCAATTTGAGCAAACGTATGGAGATCTTGCCAGCATGTTG
AAGGTTGAGCAGAGAAGGAAAGAAGCTCTTTCCAGAACAGGTGATGATGGAACATCAGAG
TTAGAGAGTTCGTTGCAAGATGTTGTATCACGCTACAGTTTCATGGATCTGTGGCCTTGC
TCTTCAAATGACTTGGATCATCTAGCACGCCAAGAGTGGCTCGCGAGGAACATCAACAAA
AAAACTGACAAACCTACTCTTGGTATTGAGGCAGGTTCTGCAGATAAGACTTCTTCTGGT
GTTTTGTCCAACACAAATCCCCCTGCCAAGGTTGTGTATCCAGATACTTCAAAAATGACA
ATTTATGACCCAAGGCAAATGTCAGGTCCTGCTGCTCTTGCGGTTCCATCTGCTTCAGGC
ACCTTACCTTGTTCTGGTAGCAGTGGTGGACCACCAAATGCTCTTAATGATATTCTGAAA
TCGTTGCCCCCTGCATTTGCAGCGTTCATGGCAAATTTGCCAGCTGTTGAAGGTCCTACT
CCTGATGCTGATTTCGTGATATCCGTATGTTTGCAAAGCAACATTCCTTTAGCAACCGGA
AAATCAGGAACCGCCTCTTTTCCGTTGCAGTCAGGCCCTGCTCCATCTACGAGTGACATC
TCTGATTCAAGCAAATTCAGGTCGAGAGACAGACAGACTGGAAAGAGGAAAGACATGGAT
AGGCAAAAGGATGATGAATCGTCGACTGTACAAAGCCAGCCCCTTCCTAGAGATGTTTTC
AAGATTCGCCAATTACAAAAAACCCGTGTTGCTAGTTCGTCTCGAGTTACTAGTTCATAC
ACTGGATCAGCGTCTTATGGTAGTGCTCTTTCTGGAGACCTCTCGGGCAGCACTGGTTGA

Peptide Sequence

PEP ID

XP_016509613.1
PEP Infomation

PREDICTED: cleavage stimulation factor subunit 77-like isoform X2 [Nicotiana tabacum]
Sequence

MTSVRKAYQRAIVTPTHHVEQLWRDYENFENSISRALAKGLVSEYQPKYNSARAVYRERK
KYIDEIDWNMLAIPPSGSSKEEMQWMAWKRLLAFEKANPQRIDSASANKRIVFTYEQCLM
YLYHYPDIWYEYATWHAKAGSIDSAIKVFQRALKALPDSEMLRYAYAELEESRGALQAAK
KVYENLLGDGSNASALSHIQFIRFLRRSEGVEAARKYFLDARKSPNCTYHVYVAHAMMAF
CLDKDAKMAHNVFEAGLKRFMHEPGYILEYADFLYRLNDDRNIRALFERALSSLPPEESV
EVWKKFTQFEQTYGDLASMLKVEQRRKEALSRTGDDGTSELESSLQDVVSRYSFMDLWPC
SSNDLDHLARQEWLARNINKKTDKPTLGIEAGSADKTSSGVLSNTNPPAKVVYPDTSKMT
IYDPRQMSGPAALAVPSASGTLPCSGSSGGPPNALNDILKSLPPAFAAFMANLPAVEGPT
PDADFVISVCLQSNIPLATGKSGTASFPLQSGPAPSTSDISDSSKFRSRDRQTGKRKDMD
RQKDDESSTVQSQPLPRDVFKIRQLQKTRVASSSRVTSSYTGSASYGSALSGDLSGSTG

Transcript Sequence

Gene sequence data has not been registered.